scanpy

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18.1k19973 months ago

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.

Quick Install

npxskills add k-dense-ai/claude-scientific-skills--skill scanpy

Instructions

No instructions available

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Tags & Topics

ai-scientistbioinformaticschemoinformaticsclaudeclaude-skillsclaudecode